NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,992.8 |
| Mean read quality |
9.7 |
| Median read length |
8,272.0 |
| Median read quality |
10.7 |
| Number of reads |
709,812.0 |
| Read length N50 |
10,156.0 |
| STDEV read length |
4,273.3 |
| Total bases |
6,383,187,577.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
709812 (100.0%) 6383.2Mb |
| >Q7 |
709812 (100.0%) 6383.2Mb |
| >Q10 |
448166 (63.1%) 4003.8Mb |
| >Q12 |
149677 (21.1%) 1320.0Mb |
| >Q15 |
125 (0.0%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (2005) |
| 2 |
16.1 (8985) |
| 3 |
15.9 (7885) |
| 4 |
15.9 (4718) |
| 5 |
15.8 (15353) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
61497 (8.6) |
| 2 |
59075 (7.2) |
| 3 |
57051 (8.7) |
| 4 |
55471 (8.1) |
| 5 |
54477 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot