NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,434.2 |
| Mean read quality |
9.8 |
| Median read length |
8,430.0 |
| Median read quality |
10.7 |
| Number of reads |
721,421.0 |
| Read length N50 |
10,708.0 |
| STDEV read length |
4,804.3 |
| Total bases |
6,806,040,347.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
721421 (100.0%) 6806.0Mb |
| >Q7 |
721420 (100.0%) 6806.0Mb |
| >Q10 |
460707 (63.9%) 4328.0Mb |
| >Q12 |
148482 (20.6%) 1376.0Mb |
| >Q15 |
110 (0.0%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.8 (5148) |
| 2 |
16.2 (2520) |
| 3 |
16.1 (2217) |
| 4 |
15.9 (2999) |
| 5 |
15.8 (3674) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
80350 (8.7) |
| 2 |
72682 (8.8) |
| 3 |
68213 (8.3) |
| 4 |
66827 (7.3) |
| 5 |
58318 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot