NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,766.6 |
| Mean read quality |
9.8 |
| Median read length |
8,028.0 |
| Median read quality |
10.7 |
| Number of reads |
731,682.0 |
| Read length N50 |
9,748.0 |
| STDEV read length |
4,124.0 |
| Total bases |
6,414,345,962.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
731682 (100.0%) 6414.3Mb |
| >Q7 |
731681 (100.0%) 6414.3Mb |
| >Q10 |
465866 (63.7%) 4061.0Mb |
| >Q12 |
152120 (20.8%) 1313.6Mb |
| >Q15 |
130 (0.0%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (5109) |
| 2 |
16.1 (2609) |
| 3 |
16.0 (19358) |
| 4 |
15.9 (5650) |
| 5 |
15.9 (5051) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
65764 (7.8) |
| 2 |
62329 (11.5) |
| 3 |
59216 (10.0) |
| 4 |
56124 (8.7) |
| 5 |
49846 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot