NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
10,261.5 |
| Mean read quality |
9.8 |
| Median read length |
9,188.0 |
| Median read quality |
10.7 |
| Number of reads |
633,105.0 |
| Read length N50 |
11,602.0 |
| STDEV read length |
4,935.4 |
| Total bases |
6,496,587,877.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
633105 (100.0%) 6496.6Mb |
| >Q7 |
633104 (100.0%) 6496.6Mb |
| >Q10 |
408548 (64.5%) 4182.9Mb |
| >Q12 |
132174 (20.9%) 1336.1Mb |
| >Q15 |
72 (0.0%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (13291) |
| 2 |
15.8 (8757) |
| 3 |
15.7 (6997) |
| 4 |
15.7 (12614) |
| 5 |
15.6 (8760) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
80578 (8.4) |
| 2 |
72212 (9.6) |
| 3 |
63749 (8.4) |
| 4 |
59977 (9.3) |
| 5 |
59561 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot