NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,418.2 |
| Mean read quality |
11.6 |
| Median read length |
4,976.0 |
| Median read quality |
13.2 |
| Number of reads |
928,827.0 |
| Read length N50 |
6,519.0 |
| STDEV read length |
2,690.5 |
| Total bases |
5,032,528,418.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
928827 (100.0%) 5032.5Mb |
| >Q7 |
928827 (100.0%) 5032.5Mb |
| >Q10 |
786103 (84.6%) 4271.4Mb |
| >Q12 |
612435 (65.9%) 3341.6Mb |
| >Q15 |
185902 (20.0%) 999.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.3 (8262) |
| 2 |
21.2 (2468) |
| 3 |
20.7 (3544) |
| 4 |
20.6 (3698) |
| 5 |
20.4 (3258) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
119213 (7.7) |
| 2 |
53631 (7.5) |
| 3 |
44690 (7.4) |
| 4 |
38800 (11.1) |
| 5 |
35084 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot