NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,766.6 |
| Mean read quality |
9.7 |
| Median read length |
7,707.0 |
| Median read quality |
10.5 |
| Number of reads |
867,639.0 |
| Read length N50 |
8,549.0 |
| STDEV read length |
3,009.3 |
| Total bases |
6,738,631,019.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
867639 (100.0%) 6738.6Mb |
| >Q7 |
867638 (100.0%) 6738.6Mb |
| >Q10 |
529020 (61.0%) 4116.9Mb |
| >Q12 |
159179 (18.3%) 1219.9Mb |
| >Q15 |
178 (0.0%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (12425) |
| 2 |
16.2 (2689) |
| 3 |
16.2 (2448) |
| 4 |
16.1 (5044) |
| 5 |
16.0 (9752) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
49233 (8.3) |
| 2 |
41070 (10.2) |
| 3 |
40528 (7.7) |
| 4 |
40248 (12.8) |
| 5 |
38699 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot