NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,887.6 |
| Mean read quality |
9.7 |
| Median read length |
7,890.0 |
| Median read quality |
10.5 |
| Number of reads |
911,339.0 |
| Read length N50 |
8,728.0 |
| STDEV read length |
3,103.3 |
| Total bases |
7,188,280,678.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
911339 (100.0%) 7188.3Mb |
| >Q7 |
911337 (100.0%) 7188.3Mb |
| >Q10 |
553892 (60.8%) 4387.2Mb |
| >Q12 |
171709 (18.8%) 1344.5Mb |
| >Q15 |
243 (0.0%) 1.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (2161) |
| 2 |
16.4 (2121) |
| 3 |
16.3 (5749) |
| 4 |
16.3 (2815) |
| 5 |
16.1 (4417) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
69409 (8.7) |
| 2 |
63352 (7.8) |
| 3 |
55116 (9.9) |
| 4 |
49626 (10.1) |
| 5 |
44362 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot