NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,149.1 |
| Mean read quality |
9.7 |
| Median read length |
7,076.0 |
| Median read quality |
10.5 |
| Number of reads |
826,317.0 |
| Read length N50 |
7,903.0 |
| STDEV read length |
2,811.7 |
| Total bases |
5,907,383,714.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
826317 (100.0%) 5907.4Mb |
| >Q7 |
826317 (100.0%) 5907.4Mb |
| >Q10 |
502209 (60.8%) 3591.3Mb |
| >Q12 |
153878 (18.6%) 1086.3Mb |
| >Q15 |
187 (0.0%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (11178) |
| 2 |
16.2 (13106) |
| 3 |
16.1 (6908) |
| 4 |
16.0 (9030) |
| 5 |
15.9 (10278) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
40254 (9.5) |
| 2 |
40195 (11.2) |
| 3 |
39893 (8.5) |
| 4 |
39566 (10.3) |
| 5 |
39329 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot