NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,814.5 |
| Mean read quality |
11.4 |
| Median read length |
6,081.0 |
| Median read quality |
12.9 |
| Number of reads |
449,723.0 |
| Read length N50 |
8,502.0 |
| STDEV read length |
3,897.1 |
| Total bases |
3,064,642,323.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
449723 (100.0%) 3064.6Mb |
| >Q7 |
449723 (100.0%) 3064.6Mb |
| >Q10 |
372608 (82.9%) 2512.3Mb |
| >Q12 |
282249 (62.8%) 1906.7Mb |
| >Q15 |
79526 (17.7%) 524.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.4 (2411) |
| 2 |
20.6 (3057) |
| 3 |
20.6 (5045) |
| 4 |
20.5 (2974) |
| 5 |
20.2 (3981) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
57720 (8.7) |
| 2 |
56162 (8.1) |
| 3 |
54972 (7.8) |
| 4 |
48466 (9.6) |
| 5 |
46717 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot