NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,270.6 |
| Mean read quality |
9.6 |
| Median read length |
6,970.0 |
| Median read quality |
10.5 |
| Number of reads |
841,604.0 |
| Read length N50 |
7,806.0 |
| STDEV read length |
2,713.1 |
| Total bases |
6,118,990,900.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
841604 (100.0%) 6119.0Mb |
| >Q7 |
841604 (100.0%) 6119.0Mb |
| >Q10 |
506193 (60.1%) 3681.6Mb |
| >Q12 |
150337 (17.9%) 1079.7Mb |
| >Q15 |
175 (0.0%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (4003) |
| 2 |
16.3 (4191) |
| 3 |
16.2 (6056) |
| 4 |
16.0 (7650) |
| 5 |
15.8 (5006) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50875 (7.2) |
| 2 |
44884 (8.6) |
| 3 |
39146 (7.4) |
| 4 |
38831 (11.1) |
| 5 |
38653 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot