NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,146.4 |
| Mean read quality |
9.6 |
| Median read length |
7,176.0 |
| Median read quality |
10.5 |
| Number of reads |
928,176.0 |
| Read length N50 |
7,962.0 |
| STDEV read length |
2,785.1 |
| Total bases |
6,633,118,880.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
928176 (100.0%) 6633.1Mb |
| >Q7 |
928176 (100.0%) 6633.1Mb |
| >Q10 |
553791 (59.7%) 3961.4Mb |
| >Q12 |
162841 (17.5%) 1146.5Mb |
| >Q15 |
163 (0.0%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (8497) |
| 2 |
16.3 (5588) |
| 3 |
16.3 (5972) |
| 4 |
16.1 (9643) |
| 5 |
16.1 (7377) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
42454 (12.2) |
| 2 |
41908 (10.9) |
| 3 |
39897 (7.4) |
| 4 |
39664 (7.5) |
| 5 |
38899 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot