NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,898.0 |
| Mean read quality |
9.7 |
| Median read length |
7,666.0 |
| Median read quality |
10.5 |
| Number of reads |
676,939.0 |
| Read length N50 |
8,527.0 |
| STDEV read length |
2,960.8 |
| Total bases |
5,346,470,988.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
676939 (100.0%) 5346.5Mb |
| >Q7 |
676939 (100.0%) 5346.5Mb |
| >Q10 |
413334 (61.1%) 3271.1Mb |
| >Q12 |
124463 (18.4%) 974.3Mb |
| >Q15 |
115 (0.0%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (10230) |
| 2 |
16.1 (5649) |
| 3 |
16.0 (2121) |
| 4 |
16.0 (6742) |
| 5 |
15.8 (2537) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
65747 (9.7) |
| 2 |
46469 (9.0) |
| 3 |
43852 (7.5) |
| 4 |
39958 (7.6) |
| 5 |
39348 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot