NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,061.8 |
| Mean read quality |
9.8 |
| Median read length |
7,691.0 |
| Median read quality |
10.7 |
| Number of reads |
719,988.0 |
| Read length N50 |
8,731.0 |
| STDEV read length |
3,145.5 |
| Total bases |
5,804,401,758.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
719988 (100.0%) 5804.4Mb |
| >Q7 |
719987 (100.0%) 5804.4Mb |
| >Q10 |
460814 (64.0%) 3700.5Mb |
| >Q12 |
161957 (22.5%) 1283.7Mb |
| >Q15 |
177 (0.0%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (6248) |
| 2 |
16.0 (8835) |
| 3 |
15.9 (2027) |
| 4 |
15.9 (4719) |
| 5 |
15.8 (11145) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
49898 (8.9) |
| 2 |
46912 (9.2) |
| 3 |
45087 (8.3) |
| 4 |
43814 (10.9) |
| 5 |
42986 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot