NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,458.7 |
| Mean read quality |
9.6 |
| Median read length |
7,691.0 |
| Median read quality |
10.4 |
| Number of reads |
594,259.0 |
| Read length N50 |
8,521.0 |
| STDEV read length |
3,131.7 |
| Total bases |
4,432,409,638.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
594259 (100.0%) 4432.4Mb |
| >Q7 |
594259 (100.0%) 4432.4Mb |
| >Q10 |
352811 (59.4%) 2619.4Mb |
| >Q12 |
71393 (12.0%) 509.2Mb |
| >Q15 |
49 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (2073) |
| 2 |
16.2 (2998) |
| 3 |
15.9 (2351) |
| 4 |
15.8 (8191) |
| 5 |
15.6 (9334) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
45157 (8.7) |
| 2 |
41621 (11.5) |
| 3 |
40936 (10.5) |
| 4 |
39869 (8.8) |
| 5 |
39521 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot