NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,526.8 |
| Mean read quality |
9.5 |
| Median read length |
5,634.0 |
| Median read quality |
10.3 |
| Number of reads |
760,118.0 |
| Read length N50 |
8,420.0 |
| STDEV read length |
3,875.6 |
| Total bases |
4,961,110,426.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
760118 (100.0%) 4961.1Mb |
| >Q7 |
760117 (100.0%) 4961.1Mb |
| >Q10 |
428854 (56.4%) 2797.1Mb |
| >Q12 |
108091 (14.2%) 681.9Mb |
| >Q15 |
106 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (3497) |
| 2 |
16.3 (2226) |
| 3 |
16.2 (9556) |
| 4 |
16.1 (10699) |
| 5 |
16.0 (3748) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54733 (9.4) |
| 2 |
47991 (7.8) |
| 3 |
43025 (8.3) |
| 4 |
42955 (11.4) |
| 5 |
41624 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot