NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,622.1 |
| Mean read quality |
9.4 |
| Median read length |
5,635.5 |
| Median read quality |
10.2 |
| Number of reads |
228,352.0 |
| Read length N50 |
8,500.0 |
| STDEV read length |
4,068.8 |
| Total bases |
1,512,179,350.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
228352 (100.0%) 1512.2Mb |
| >Q7 |
228352 (100.0%) 1512.2Mb |
| >Q10 |
127000 (55.6%) 833.4Mb |
| >Q12 |
28979 (12.7%) 180.4Mb |
| >Q15 |
9 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.7 (2321) |
| 2 |
15.5 (2232) |
| 3 |
15.5 (2013) |
| 4 |
15.5 (3545) |
| 5 |
15.4 (17999) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
45445 (8.0) |
| 2 |
44613 (9.4) |
| 3 |
43275 (11.6) |
| 4 |
43078 (8.2) |
| 5 |
42168 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot