NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,782.0 |
| Mean read quality |
9.3 |
| Median read length |
6,195.0 |
| Median read quality |
10.1 |
| Number of reads |
603,395.0 |
| Read length N50 |
8,687.0 |
| STDEV read length |
3,879.9 |
| Total bases |
4,092,237,087.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
603395 (100.0%) 4092.2Mb |
| >Q7 |
603393 (100.0%) 4092.2Mb |
| >Q10 |
315203 (52.2%) 2137.6Mb |
| >Q12 |
65781 (10.9%) 425.4Mb |
| >Q15 |
17 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (2727) |
| 2 |
15.7 (3413) |
| 3 |
15.4 (2030) |
| 4 |
15.4 (3191) |
| 5 |
15.3 (2155) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
48764 (7.9) |
| 2 |
48205 (8.1) |
| 3 |
47106 (10.4) |
| 4 |
42030 (12.5) |
| 5 |
40665 (9.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot