NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,585.0 |
| Mean read quality |
11.7 |
| Median read length |
6,127.0 |
| Median read quality |
13.2 |
| Number of reads |
971,117.0 |
| Read length N50 |
8,178.0 |
| STDEV read length |
3,576.1 |
| Total bases |
6,394,819,640.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
971117 (100.0%) 6394.8Mb |
| >Q7 |
971117 (100.0%) 6394.8Mb |
| >Q10 |
831572 (85.6%) 5503.9Mb |
| >Q12 |
647705 (66.7%) 4311.1Mb |
| >Q15 |
197355 (20.3%) 1284.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.7 (2052) |
| 2 |
20.7 (2609) |
| 3 |
20.7 (8245) |
| 4 |
20.6 (8022) |
| 5 |
20.6 (3208) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
67205 (8.1) |
| 2 |
50922 (8.5) |
| 3 |
50765 (10.0) |
| 4 |
50529 (13.5) |
| 5 |
43158 (16.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot