NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,647.6 |
| Mean read quality |
11.3 |
| Median read length |
4,720.0 |
| Median read quality |
12.6 |
| Number of reads |
690,078.0 |
| Read length N50 |
7,097.0 |
| STDEV read length |
3,429.2 |
| Total bases |
3,897,258,683.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
690078 (100.0%) 3897.3Mb |
| >Q7 |
690075 (100.0%) 3897.3Mb |
| >Q10 |
565167 (81.9%) 3186.4Mb |
| >Q12 |
408561 (59.2%) 2299.1Mb |
| >Q15 |
105045 (15.2%) 559.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.6 (2188) |
| 2 |
20.6 (4470) |
| 3 |
20.4 (2496) |
| 4 |
20.4 (3922) |
| 5 |
20.3 (2041) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
630912 (7.7) |
| 2 |
178245 (8.2) |
| 3 |
45414 (10.7) |
| 4 |
44398 (12.3) |
| 5 |
42312 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot