NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,377.7 |
| Mean read quality |
9.9 |
| Median read length |
9,445.0 |
| Median read quality |
10.8 |
| Number of reads |
907,350.0 |
| Read length N50 |
10,363.0 |
| STDEV read length |
3,683.5 |
| Total bases |
8,508,898,946.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
907350 (100.0%) 8508.9Mb |
| >Q7 |
907347 (100.0%) 8508.9Mb |
| >Q10 |
615857 (67.9%) 5747.2Mb |
| >Q12 |
178295 (19.7%) 1630.7Mb |
| >Q15 |
56 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (2084) |
| 2 |
15.8 (2616) |
| 3 |
15.6 (11668) |
| 4 |
15.6 (5283) |
| 5 |
15.5 (10347) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
73075 (8.2) |
| 2 |
65983 (11.3) |
| 3 |
64356 (10.8) |
| 4 |
50860 (9.8) |
| 5 |
49578 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot