NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,029.0 |
| Mean read quality |
11.7 |
| Median read length |
5,452.0 |
| Median read quality |
13.0 |
| Number of reads |
976,268.0 |
| Read length N50 |
7,297.0 |
| STDEV read length |
3,192.8 |
| Total bases |
5,885,939,060.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
976268 (100.0%) 5885.9Mb |
| >Q7 |
976268 (100.0%) 5885.9Mb |
| >Q10 |
848998 (87.0%) 5112.6Mb |
| >Q12 |
642122 (65.8%) 3874.0Mb |
| >Q15 |
150549 (15.4%) 866.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.4 (2487) |
| 2 |
20.9 (2076) |
| 3 |
20.8 (2729) |
| 4 |
20.6 (3436) |
| 5 |
20.6 (6412) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54921 (8.2) |
| 2 |
52341 (8.3) |
| 3 |
50404 (8.4) |
| 4 |
47599 (8.6) |
| 5 |
44598 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot