NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,482.0 |
| Mean read quality |
9.7 |
| Median read length |
7,878.0 |
| Median read quality |
10.6 |
| Number of reads |
651,590.0 |
| Read length N50 |
9,655.0 |
| STDEV read length |
4,084.6 |
| Total bases |
5,526,777,646.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
651590 (100.0%) 5526.8Mb |
| >Q7 |
651590 (100.0%) 5526.8Mb |
| >Q10 |
417546 (64.1%) 3510.5Mb |
| >Q12 |
108943 (16.7%) 896.8Mb |
| >Q15 |
39 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (2070) |
| 2 |
15.8 (3462) |
| 3 |
15.8 (2122) |
| 4 |
15.7 (2102) |
| 5 |
15.6 (3139) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
66145 (7.9) |
| 2 |
56883 (7.5) |
| 3 |
54129 (8.5) |
| 4 |
54034 (8.9) |
| 5 |
52076 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot