NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,470.1 |
| Mean read quality |
9.5 |
| Median read length |
5,699.0 |
| Median read quality |
10.3 |
| Number of reads |
487,330.0 |
| Read length N50 |
8,220.0 |
| STDEV read length |
3,743.4 |
| Total bases |
3,153,076,357.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
487330 (100.0%) 3153.1Mb |
| >Q7 |
487330 (100.0%) 3153.1Mb |
| >Q10 |
277832 (57.0%) 1796.7Mb |
| >Q12 |
71408 (14.7%) 449.5Mb |
| >Q15 |
63 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (2748) |
| 2 |
15.9 (2379) |
| 3 |
15.9 (2817) |
| 4 |
15.9 (2464) |
| 5 |
15.7 (4257) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
59878 (12.5) |
| 2 |
44737 (9.7) |
| 3 |
44073 (7.7) |
| 4 |
43203 (8.8) |
| 5 |
42724 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot