NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
10,662.7 |
| Mean read quality |
10.4 |
| Median read length |
10,184.0 |
| Median read quality |
11.4 |
| Number of reads |
431,013.0 |
| Read length N50 |
11,639.0 |
| STDEV read length |
4,671.2 |
| Total bases |
4,595,777,835.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
431013 (100.0%) 4595.8Mb |
| >Q7 |
431012 (100.0%) 4595.8Mb |
| >Q10 |
331380 (76.9%) 3530.6Mb |
| >Q12 |
155068 (36.0%) 1652.2Mb |
| >Q15 |
87 (0.0%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (5458) |
| 2 |
16.4 (3021) |
| 3 |
16.3 (8046) |
| 4 |
16.0 (5734) |
| 5 |
15.8 (9798) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
110995 (7.2) |
| 2 |
104236 (8.6) |
| 3 |
71945 (8.9) |
| 4 |
69506 (8.8) |
| 5 |
66056 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot