NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,422.1 |
| Mean read quality |
10.8 |
| Median read length |
4,230.0 |
| Median read quality |
12.1 |
| Number of reads |
528,936.0 |
| Read length N50 |
6,848.0 |
| STDEV read length |
3,470.7 |
| Total bases |
2,867,924,170.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
528936 (100.0%) 2867.9Mb |
| >Q7 |
528936 (100.0%) 2867.9Mb |
| >Q10 |
401822 (76.0%) 2167.0Mb |
| >Q12 |
271109 (51.3%) 1452.4Mb |
| >Q15 |
70437 (13.3%) 358.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (2952) |
| 2 |
20.6 (2523) |
| 3 |
20.4 (2754) |
| 4 |
20.4 (2817) |
| 5 |
20.3 (2460) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
94862 (9.3) |
| 2 |
55049 (12.9) |
| 3 |
48194 (8.3) |
| 4 |
43935 (8.5) |
| 5 |
39970 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot