NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,812.3 |
| Mean read quality |
11.3 |
| Median read length |
3,808.0 |
| Median read quality |
12.7 |
| Number of reads |
504,942.0 |
| Read length N50 |
5,681.0 |
| STDEV read length |
2,963.3 |
| Total bases |
2,429,946,441.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
504942 (100.0%) 2429.9Mb |
| >Q7 |
504942 (100.0%) 2429.9Mb |
| >Q10 |
413137 (81.8%) 1973.2Mb |
| >Q12 |
300783 (59.6%) 1430.4Mb |
| >Q15 |
80024 (15.8%) 363.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.7 (2331) |
| 2 |
20.3 (3208) |
| 3 |
20.2 (2124) |
| 4 |
20.0 (5580) |
| 5 |
20.0 (5039) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
40628 (9.1) |
| 2 |
38136 (9.1) |
| 3 |
36825 (8.8) |
| 4 |
35804 (13.7) |
| 5 |
34687 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot