NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,096.9 |
| Mean read quality |
9.7 |
| Median read length |
8,299.0 |
| Median read quality |
10.7 |
| Number of reads |
523,490.0 |
| Read length N50 |
10,547.0 |
| STDEV read length |
4,761.3 |
| Total bases |
4,762,131,644.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
523490 (100.0%) 4762.1Mb |
| >Q7 |
523490 (100.0%) 4762.1Mb |
| >Q10 |
337612 (64.5%) 3045.8Mb |
| >Q12 |
90869 (17.4%) 797.6Mb |
| >Q15 |
47 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (2154) |
| 2 |
16.0 (13913) |
| 3 |
15.9 (2952) |
| 4 |
15.7 (11970) |
| 5 |
15.7 (2647) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
74367 (8.3) |
| 2 |
62864 (8.5) |
| 3 |
61204 (9.0) |
| 4 |
56665 (8.0) |
| 5 |
55448 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot