NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,086.0 |
| Mean read quality |
11.1 |
| Median read length |
5,654.0 |
| Median read quality |
12.4 |
| Number of reads |
476,473.0 |
| Read length N50 |
7,307.0 |
| STDEV read length |
3,078.6 |
| Total bases |
2,899,793,012.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
476473 (100.0%) 2899.8Mb |
| >Q7 |
476473 (100.0%) 2899.8Mb |
| >Q10 |
382975 (80.4%) 2328.8Mb |
| >Q12 |
264573 (55.5%) 1608.1Mb |
| >Q15 |
72599 (15.2%) 430.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.0 (2475) |
| 2 |
20.6 (4039) |
| 3 |
20.5 (6029) |
| 4 |
20.4 (8542) |
| 5 |
20.4 (2310) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
132252 (7.3) |
| 2 |
47766 (13.9) |
| 3 |
41529 (8.9) |
| 4 |
39717 (9.3) |
| 5 |
39306 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot