NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,943.5 |
| Mean read quality |
10.3 |
| Median read length |
8,897.0 |
| Median read quality |
11.4 |
| Number of reads |
587,966.0 |
| Read length N50 |
9,893.0 |
| STDEV read length |
3,952.0 |
| Total bases |
5,258,448,020.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
587966 (100.0%) 5258.4Mb |
| >Q7 |
587966 (100.0%) 5258.4Mb |
| >Q10 |
445090 (75.7%) 3971.6Mb |
| >Q12 |
207661 (35.3%) 1850.2Mb |
| >Q15 |
202 (0.0%) 1.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (13902) |
| 2 |
16.0 (2951) |
| 3 |
16.0 (2783) |
| 4 |
15.8 (8869) |
| 5 |
15.8 (2155) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
109711 (7.6) |
| 2 |
96244 (9.4) |
| 3 |
87191 (8.3) |
| 4 |
69867 (10.6) |
| 5 |
69740 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot