NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,932.2 |
| Mean read quality |
9.5 |
| Median read length |
9,358.0 |
| Median read quality |
10.4 |
| Number of reads |
632,523.0 |
| Read length N50 |
12,174.0 |
| STDEV read length |
6,226.0 |
| Total bases |
6,282,356,319.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
632523 (100.0%) 6282.4Mb |
| >Q7 |
632523 (100.0%) 6282.4Mb |
| >Q10 |
371923 (58.8%) 3677.6Mb |
| >Q12 |
95976 (15.2%) 913.1Mb |
| >Q15 |
39 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (2593) |
| 2 |
15.7 (2015) |
| 3 |
15.4 (4019) |
| 4 |
15.4 (6815) |
| 5 |
15.3 (4165) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
79392 (9.0) |
| 2 |
77308 (7.9) |
| 3 |
72238 (11.5) |
| 4 |
70189 (9.5) |
| 5 |
70001 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot