NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
10,143.4 |
| Mean read quality |
10.4 |
| Median read length |
9,771.0 |
| Median read quality |
11.4 |
| Number of reads |
452,519.0 |
| Read length N50 |
11,014.0 |
| STDEV read length |
4,457.1 |
| Total bases |
4,590,068,494.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
452519 (100.0%) 4590.1Mb |
| >Q7 |
452519 (100.0%) 4590.1Mb |
| >Q10 |
345111 (76.3%) 3492.9Mb |
| >Q12 |
161160 (35.6%) 1629.8Mb |
| >Q15 |
112 (0.0%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (8344) |
| 2 |
15.9 (2999) |
| 3 |
15.8 (11145) |
| 4 |
15.8 (9263) |
| 5 |
15.8 (3755) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
99598 (7.6) |
| 2 |
94282 (7.8) |
| 3 |
89609 (8.0) |
| 4 |
81327 (7.6) |
| 5 |
77029 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot