NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,981.3 |
| Mean read quality |
10.3 |
| Median read length |
8,707.0 |
| Median read quality |
11.4 |
| Number of reads |
553,763.0 |
| Read length N50 |
9,815.0 |
| STDEV read length |
4,113.5 |
| Total bases |
4,973,504,663.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
553763 (100.0%) 4973.5Mb |
| >Q7 |
553763 (100.0%) 4973.5Mb |
| >Q10 |
420142 (75.9%) 3765.8Mb |
| >Q12 |
194239 (35.1%) 1740.7Mb |
| >Q15 |
192 (0.0%) 1.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (9379) |
| 2 |
16.2 (3250) |
| 3 |
16.1 (5012) |
| 4 |
16.0 (2379) |
| 5 |
15.9 (9778) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
173278 (8.2) |
| 2 |
168179 (8.8) |
| 3 |
97320 (9.7) |
| 4 |
79362 (7.7) |
| 5 |
77893 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot