NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,237.2 |
| Mean read quality |
10.4 |
| Median read length |
9,259.0 |
| Median read quality |
11.4 |
| Number of reads |
470,797.0 |
| Read length N50 |
10,393.0 |
| STDEV read length |
4,106.4 |
| Total bases |
4,348,861,182.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
470797 (100.0%) 4348.9Mb |
| >Q7 |
470797 (100.0%) 4348.9Mb |
| >Q10 |
358467 (76.1%) 3303.0Mb |
| >Q12 |
166338 (35.3%) 1529.8Mb |
| >Q15 |
150 (0.0%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (3134) |
| 2 |
16.2 (4897) |
| 3 |
16.0 (6955) |
| 4 |
16.0 (2019) |
| 5 |
16.0 (3268) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
97445 (7.3) |
| 2 |
69185 (7.3) |
| 3 |
66646 (8.5) |
| 4 |
63094 (7.2) |
| 5 |
62614 (7.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot