NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,421.8 |
| Mean read quality |
10.3 |
| Median read length |
9,494.0 |
| Median read quality |
11.4 |
| Number of reads |
502,475.0 |
| Read length N50 |
10,628.0 |
| STDEV read length |
4,068.3 |
| Total bases |
4,734,235,361.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
502475 (100.0%) 4734.2Mb |
| >Q7 |
502474 (100.0%) 4734.2Mb |
| >Q10 |
380694 (75.8%) 3584.6Mb |
| >Q12 |
176025 (35.0%) 1655.9Mb |
| >Q15 |
182 (0.0%) 1.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (2582) |
| 2 |
16.3 (11185) |
| 3 |
16.2 (9605) |
| 4 |
16.0 (4129) |
| 5 |
15.9 (2447) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
112036 (8.9) |
| 2 |
91038 (8.9) |
| 3 |
68990 (8.4) |
| 4 |
66251 (9.0) |
| 5 |
65144 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot