NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
10,004.9 |
| Mean read quality |
10.4 |
| Median read length |
10,085.0 |
| Median read quality |
11.4 |
| Number of reads |
444,052.0 |
| Read length N50 |
11,910.0 |
| STDEV read length |
5,123.2 |
| Total bases |
4,442,674,121.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
444052 (100.0%) 4442.7Mb |
| >Q7 |
444052 (100.0%) 4442.7Mb |
| >Q10 |
340486 (76.7%) 3414.5Mb |
| >Q12 |
157900 (35.6%) 1577.7Mb |
| >Q15 |
161 (0.0%) 1.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (2864) |
| 2 |
16.1 (3133) |
| 3 |
16.0 (13482) |
| 4 |
16.0 (4356) |
| 5 |
16.0 (2233) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
122623 (8.1) |
| 2 |
116968 (8.8) |
| 3 |
75592 (8.9) |
| 4 |
72414 (8.5) |
| 5 |
69869 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot