NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,916.6 |
| Mean read quality |
9.6 |
| Median read length |
10,163.0 |
| Median read quality |
10.4 |
| Number of reads |
587,941.0 |
| Read length N50 |
11,040.0 |
| STDEV read length |
3,825.9 |
| Total bases |
5,830,381,361.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
587941 (100.0%) 5830.4Mb |
| >Q7 |
587940 (100.0%) 5830.4Mb |
| >Q10 |
349801 (59.5%) 3465.0Mb |
| >Q12 |
87611 (14.9%) 856.8Mb |
| >Q15 |
36 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (4085) |
| 2 |
15.7 (5994) |
| 3 |
15.6 (2321) |
| 4 |
15.6 (9868) |
| 5 |
15.6 (11125) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
60638 (9.7) |
| 2 |
53935 (11.6) |
| 3 |
51078 (8.3) |
| 4 |
49373 (8.7) |
| 5 |
48927 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot