NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,514.0 |
| Mean read quality |
10.4 |
| Median read length |
8,013.0 |
| Median read quality |
11.4 |
| Number of reads |
513,650.0 |
| Read length N50 |
9,283.0 |
| STDEV read length |
4,139.6 |
| Total bases |
4,373,197,784.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
513650 (100.0%) 4373.2Mb |
| >Q7 |
513649 (100.0%) 4373.2Mb |
| >Q10 |
393959 (76.7%) 3341.9Mb |
| >Q12 |
186862 (36.4%) 1580.0Mb |
| >Q15 |
230 (0.0%) 1.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (6885) |
| 2 |
16.1 (11215) |
| 3 |
15.9 (2356) |
| 4 |
15.9 (11073) |
| 5 |
15.9 (7409) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
217150 (7.2) |
| 2 |
158053 (8.8) |
| 3 |
142411 (7.7) |
| 4 |
77955 (8.7) |
| 5 |
76790 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot