NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,368.0 |
| Mean read quality |
9.8 |
| Median read length |
8,705.0 |
| Median read quality |
10.8 |
| Number of reads |
466,239.0 |
| Read length N50 |
10,422.0 |
| STDEV read length |
4,268.1 |
| Total bases |
4,367,725,023.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
466239 (100.0%) 4367.7Mb |
| >Q7 |
466239 (100.0%) 4367.7Mb |
| >Q10 |
303292 (65.1%) 2815.0Mb |
| >Q12 |
110425 (23.7%) 1017.8Mb |
| >Q15 |
190 (0.0%) 1.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (2630) |
| 2 |
16.2 (3393) |
| 3 |
16.1 (11915) |
| 4 |
16.1 (13826) |
| 5 |
16.0 (8396) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
82795 (8.7) |
| 2 |
57581 (10.9) |
| 3 |
56125 (9.6) |
| 4 |
52888 (9.2) |
| 5 |
52533 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot