NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,203.3 |
| Mean read quality |
10.3 |
| Median read length |
8,574.0 |
| Median read quality |
11.3 |
| Number of reads |
460,686.0 |
| Read length N50 |
10,402.0 |
| STDEV read length |
4,797.1 |
| Total bases |
4,239,821,232.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
460686 (100.0%) 4239.8Mb |
| >Q7 |
460686 (100.0%) 4239.8Mb |
| >Q10 |
349153 (75.8%) 3213.9Mb |
| >Q12 |
151941 (33.0%) 1395.8Mb |
| >Q15 |
140 (0.0%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (3473) |
| 2 |
16.4 (2218) |
| 3 |
16.0 (8788) |
| 4 |
15.9 (16397) |
| 5 |
15.8 (5602) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
160141 (8.1) |
| 2 |
88357 (8.0) |
| 3 |
81388 (7.8) |
| 4 |
64503 (8.7) |
| 5 |
63285 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot