NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,771.9 |
| Mean read quality |
10.2 |
| Median read length |
8,707.0 |
| Median read quality |
11.3 |
| Number of reads |
506,141.0 |
| Read length N50 |
9,774.0 |
| STDEV read length |
3,966.8 |
| Total bases |
4,439,798,239.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
506141 (100.0%) 4439.8Mb |
| >Q7 |
506141 (100.0%) 4439.8Mb |
| >Q10 |
375673 (74.2%) 3274.6Mb |
| >Q12 |
162327 (32.1%) 1417.9Mb |
| >Q15 |
162 (0.0%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (11019) |
| 2 |
16.0 (2068) |
| 3 |
15.9 (14453) |
| 4 |
15.9 (2696) |
| 5 |
15.8 (4863) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
185696 (7.6) |
| 2 |
148700 (7.5) |
| 3 |
80170 (8.6) |
| 4 |
78586 (7.3) |
| 5 |
71592 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot