NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,550.9 |
| Mean read quality |
9.9 |
| Median read length |
8,617.0 |
| Median read quality |
10.9 |
| Number of reads |
639,622.0 |
| Read length N50 |
9,808.0 |
| STDEV read length |
4,052.0 |
| Total bases |
5,469,371,837.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
639622 (100.0%) 5469.4Mb |
| >Q7 |
639622 (100.0%) 5469.4Mb |
| >Q10 |
438338 (68.5%) 3737.4Mb |
| >Q12 |
132300 (20.7%) 1108.9Mb |
| >Q15 |
49 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (2490) |
| 2 |
15.9 (2298) |
| 3 |
15.8 (2546) |
| 4 |
15.7 (2025) |
| 5 |
15.6 (9751) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
79180 (7.3) |
| 2 |
65497 (9.4) |
| 3 |
52670 (9.7) |
| 4 |
51211 (8.0) |
| 5 |
51138 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot