NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,134.8 |
| Mean read quality |
9.9 |
| Median read length |
8,666.0 |
| Median read quality |
10.9 |
| Number of reads |
574,414.0 |
| Read length N50 |
10,341.0 |
| STDEV read length |
4,602.4 |
| Total bases |
5,247,168,679.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
574414 (100.0%) 5247.2Mb |
| >Q7 |
574414 (100.0%) 5247.2Mb |
| >Q10 |
393558 (68.5%) 3599.6Mb |
| >Q12 |
115631 (20.1%) 1042.6Mb |
| >Q15 |
61 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (9723) |
| 2 |
15.8 (12694) |
| 3 |
15.7 (16900) |
| 4 |
15.7 (2962) |
| 5 |
15.6 (4524) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
60489 (8.2) |
| 2 |
59569 (8.7) |
| 3 |
58945 (8.7) |
| 4 |
53263 (8.6) |
| 5 |
51638 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot