NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,270.2 |
| Mean read quality |
9.8 |
| Median read length |
7,860.0 |
| Median read quality |
10.8 |
| Number of reads |
703,960.0 |
| Read length N50 |
8,799.0 |
| STDEV read length |
3,064.7 |
| Total bases |
5,821,863,743.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
703960 (100.0%) 5821.9Mb |
| >Q7 |
703960 (100.0%) 5821.9Mb |
| >Q10 |
459811 (65.3%) 3785.1Mb |
| >Q12 |
164221 (23.3%) 1344.6Mb |
| >Q15 |
289 (0.0%) 2.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (7392) |
| 2 |
16.5 (2727) |
| 3 |
16.5 (7614) |
| 4 |
16.3 (7285) |
| 5 |
16.2 (6877) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
61059 (9.8) |
| 2 |
50883 (9.0) |
| 3 |
50647 (9.2) |
| 4 |
48069 (9.4) |
| 5 |
47553 (8.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot