NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,519.0 |
| Mean read quality |
9.8 |
| Median read length |
7,182.0 |
| Median read quality |
10.8 |
| Number of reads |
742,116.0 |
| Read length N50 |
8,237.0 |
| STDEV read length |
3,063.1 |
| Total bases |
5,579,948,090.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
742116 (100.0%) 5579.9Mb |
| >Q7 |
742115 (100.0%) 5579.9Mb |
| >Q10 |
481651 (64.9%) 3599.4Mb |
| >Q12 |
175580 (23.7%) 1301.2Mb |
| >Q15 |
310 (0.0%) 2.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (6968) |
| 2 |
16.1 (5475) |
| 3 |
16.0 (7837) |
| 4 |
16.0 (7020) |
| 5 |
16.0 (4025) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54916 (8.7) |
| 2 |
48612 (8.9) |
| 3 |
45857 (9.7) |
| 4 |
43461 (8.1) |
| 5 |
42887 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot