NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,530.7 |
| Mean read quality |
9.9 |
| Median read length |
7,951.0 |
| Median read quality |
10.9 |
| Number of reads |
556,115.0 |
| Read length N50 |
9,426.0 |
| STDEV read length |
4,351.0 |
| Total bases |
4,744,077,983.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
556115 (100.0%) 4744.1Mb |
| >Q7 |
556115 (100.0%) 4744.1Mb |
| >Q10 |
387029 (69.6%) 3284.0Mb |
| >Q12 |
114840 (20.7%) 958.2Mb |
| >Q15 |
41 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (14910) |
| 2 |
15.8 (6357) |
| 3 |
15.7 (7597) |
| 4 |
15.6 (4274) |
| 5 |
15.4 (10968) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
71637 (11.5) |
| 2 |
59173 (9.7) |
| 3 |
58875 (8.5) |
| 4 |
58767 (8.4) |
| 5 |
56359 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot