NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,084.8 |
| Mean read quality |
9.7 |
| Median read length |
7,508.0 |
| Median read quality |
10.6 |
| Number of reads |
696,011.0 |
| Read length N50 |
9,218.0 |
| STDEV read length |
4,025.9 |
| Total bases |
5,627,113,624.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
696011 (100.0%) 5627.1Mb |
| >Q7 |
696010 (100.0%) 5627.1Mb |
| >Q10 |
444634 (63.9%) 3564.8Mb |
| >Q12 |
115162 (16.5%) 898.7Mb |
| >Q15 |
112 (0.0%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (2705) |
| 2 |
16.2 (6364) |
| 3 |
16.2 (7645) |
| 4 |
16.0 (9448) |
| 5 |
16.0 (7089) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
55207 (8.7) |
| 2 |
53725 (8.3) |
| 3 |
47760 (8.7) |
| 4 |
47209 (8.8) |
| 5 |
46089 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot