NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,686.8 |
| Mean read quality |
11.3 |
| Median read length |
5,652.0 |
| Median read quality |
12.9 |
| Number of reads |
421,920.0 |
| Read length N50 |
8,419.0 |
| STDEV read length |
4,186.2 |
| Total bases |
2,821,294,216.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
421920 (100.0%) 2821.3Mb |
| >Q7 |
421920 (100.0%) 2821.3Mb |
| >Q10 |
341533 (80.9%) 2225.8Mb |
| >Q12 |
261305 (61.9%) 1702.6Mb |
| >Q15 |
82942 (19.7%) 526.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.0 (5315) |
| 2 |
20.9 (5409) |
| 3 |
20.9 (2135) |
| 4 |
20.8 (2029) |
| 5 |
20.7 (2728) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
69944 (7.7) |
| 2 |
65238 (7.9) |
| 3 |
62901 (7.4) |
| 4 |
54070 (11.9) |
| 5 |
53122 (14.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot