NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,424.5 |
| Mean read quality |
9.6 |
| Median read length |
7,332.0 |
| Median read quality |
10.5 |
| Number of reads |
609,832.0 |
| Read length N50 |
8,289.0 |
| STDEV read length |
3,060.3 |
| Total bases |
4,527,699,567.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
609832 (100.0%) 4527.7Mb |
| >Q7 |
609832 (100.0%) 4527.7Mb |
| >Q10 |
369904 (60.7%) 2731.8Mb |
| >Q12 |
81832 (13.4%) 587.9Mb |
| >Q15 |
45 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (2009) |
| 2 |
15.7 (7203) |
| 3 |
15.6 (3319) |
| 4 |
15.6 (12135) |
| 5 |
15.6 (2317) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
47845 (11.3) |
| 2 |
40305 (8.2) |
| 3 |
37839 (8.6) |
| 4 |
37602 (8.9) |
| 5 |
37466 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot