NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,093.1 |
| Mean read quality |
9.6 |
| Median read length |
6,920.0 |
| Median read quality |
10.5 |
| Number of reads |
523,272.0 |
| Read length N50 |
8,971.0 |
| STDEV read length |
3,949.9 |
| Total bases |
3,711,629,661.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
523272 (100.0%) 3711.6Mb |
| >Q7 |
523271 (100.0%) 3711.6Mb |
| >Q10 |
322596 (61.6%) 2268.9Mb |
| >Q12 |
74511 (14.2%) 494.9Mb |
| >Q15 |
31 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (9392) |
| 2 |
15.8 (2458) |
| 3 |
15.7 (6481) |
| 4 |
15.6 (3057) |
| 5 |
15.6 (2018) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
60433 (8.6) |
| 2 |
56657 (8.3) |
| 3 |
55095 (8.3) |
| 4 |
52966 (8.6) |
| 5 |
51226 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot