NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,053.6 |
| Mean read quality |
9.9 |
| Median read length |
7,125.0 |
| Median read quality |
10.8 |
| Number of reads |
623,345.0 |
| Read length N50 |
9,353.0 |
| STDEV read length |
4,416.1 |
| Total bases |
5,020,201,766.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
623345 (100.0%) 5020.2Mb |
| >Q7 |
623345 (100.0%) 5020.2Mb |
| >Q10 |
405526 (65.1%) 3222.1Mb |
| >Q12 |
156329 (25.1%) 1223.3Mb |
| >Q15 |
330 (0.1%) 2.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (7405) |
| 2 |
16.3 (10591) |
| 3 |
16.3 (4867) |
| 4 |
16.0 (6222) |
| 5 |
16.0 (4327) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
61687 (7.9) |
| 2 |
57088 (8.5) |
| 3 |
56300 (8.3) |
| 4 |
52230 (9.8) |
| 5 |
51544 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot